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Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Human and Animals

Tools HumanNetLogo.jpg MouseNetLogo.png Danionet logo.png Flynet.png WormNetv3.jpg
Homo sapiens Mus musculus Danio rerio Drosophila melanogaster Caenorhabditis elegans


Aranet v2.jpg RiceNetv2 logo.png Soynetlogo.png
Arabidopsis thaliana Oryza sativa Glycine max


Tools YesatNetLogo.jpg CryptoNet.png
Saccharomyces cerevisiae Cryptococcus neoformans


Pseudomonas logo.jpg EcoliNet.png
Pseudomonas aeruginosa Escherichia coli

COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)

Coexpedia.png COEXPEDIA is currently available for human and mouse.

TRRUST: A reference database of human TF-target interactions

TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.

MUFFINN: cancer gene discovery via network analysis of somatic mutation data

Cover title muffinn.png MUFFINN (MUtations For Functional Impact on Network Neighbors).

MORPHIN: Network-assisted prediction of disease pathways in model organisms

Logo morphin.png Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.

JiffyNet:Instant gene network building server for newly sequenced species

Jiffynetlogo4 small.jpg Jiffy (instant) gene network modeler for newly sequenced species

RIDDLE: Network-assisted Gene Set Analysis (human only)

Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.

Domain-based PPI networks by Weighted Mutual Information (WMI)

Project Page

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