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Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Animal

Tools HumanNetLogo.jpg MouseNetLogo.png WormNetv3.jpg Flynet.png
Homo sapiens Mus musculus Caenorhabditis elegans Drosophila melanogaster

Plant

Aranet v2.jpg RiceNetv2 logo.png Soynetlogo.png
Arabidopsis thaliana Oryza sativa Glycine max

Microbe

Tools YesatNetLogo.jpg CryptoNet.png Pseudomonas logo.jpg EcoliNet.png
Saccharomyces cerevisiae Cryptococcus neoformans Pseudomonas aeruginosa Escherichia coli


TRRUST: A reference database of human TF-target interactions

TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining) is currently available for only human genes.


MUFFINN: cancer gene discovery via network analysis of somatic mutation data

Cover title muffinn.png MUFFINN (MUtations For Functional Impact on Network Neighbors).


MORPHIN: Network-assisted prediction of disease pathways in model organisms

Logo morphin.png Morphin (Model Organisms Projected on a Human Integrated Gene Network) is currently available.


JiffyNet:Instant gene network building server for newly sequenced species

Jiffynetlogo4 small.jpg Jiffy (instant) gene network modeler for newly sequenced species


RIDDLE: Network-assisted Gene Set Analysis (human only)

Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension) is currently available for only human genes.


Domain-based PPI networks by Weighted Mutual Information (WMI)

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