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Co-functional networks: Organism-specific network-assisted hypothesis generation servers

Human and Animals

Tools HumanNetLogo.jpg MouseNetLogo.png Danionet logo.png Flynet.png WormNetv3.jpg
Homo sapiens Mus musculus Danio rerio Drosophila melanogaster Caenorhabditis elegans

Plants

Aranet v2.jpg RiceNetv2 logo.png Soynetlogo.png
Arabidopsis thaliana Oryza sativa Glycine max

Fungi

Tools YesatNetLogo.jpg CryptoNet.png
Saccharomyces cerevisiae Cryptococcus neoformans

Bacteria

Pseudomonas logo.jpg EcoliNet.png
Pseudomonas aeruginosa Escherichia coli



Other Network Biology tools

Coexpedia.png COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)


TRRUST logo.jpg TRRUST (Transcriptional Regulatory relationships Unraveled by Sentence-based Text mining): A reference database of human TF-target interactions


Cover title muffinn.png MUFFINN (MUtations For Functional Impact on Network Neighbors): cancer gene discovery via network analysis of somatic mutation data


Logo morphin.png MORPHIN (Model Organisms Projected on a Human Integrated Gene Network): Network-assisted prediction of disease pathways in model organisms


Jiffynetlogo4 small.jpg JiffyNet:Instant gene network building server for newly sequenced species


Cover title riddle.jpg RIDDLE (Reflective diffusion and local extension): Network-assisted Gene Set Analysis (human only)



Domain-based PPI networks by Weighted Mutual Information (WMI)

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